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Species belonging to selected taxon:

Helianthus exilis



ABOUT THIS RECORD

ID: MNEST000860
species: Helianthus exilis
miRNA family: MIR171
source: miRNEST

Taxonomy by NCBI:
Helianthus exilis Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTGAGCCGTGCCAATATCACG

miRNA*
AGATGTTGGTTCGGTTCAATA

mismatches: 2
bulges: 0

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pre-miRNA
GTACTGCTTTGCGACTTCTATGAGAGGGAGCTGTTGAACGAGATGTTGGTTCGGTTCAATAAGAACTCAATGTTCAAATAGTGCATTGAACGTTGCTTTT
TGATTGAGCCGTGCCAATATCACGTGCATGTTGCTTCTAAATTTTCACAAGTCTTTTGTAA


dot-bracket secondary structure
............(((((...(((((((((((...((.(((.(((((((((.(((((((((.((((..((((((((((........))))))))))..)))
).))))))))).))))))))).))).))....))))))....))))).)))))........



SIMILARITIES
miRBase rco-MIR171a: 0.0000000000006

PMRD vvi-miR171c: 0.0000000005

microPC miR171: 2e-43
UniProt no hits

RFAM MIR171_1: 0.00000000001
most similar mature miRNAs

Identical with: miR171 from microPC (MNEST044805)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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